SubtiBank SubtiBank
ywbO [2019-03-13 13:01:42]
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ywbO [2019-03-13 13:01:42]

unknown
locus
BSU38250
pI
4.64
mw
22.49 kDa
protein length
200 aa Sequence Blast
gene length
603 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ipa-30d
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]

    • Gene

    Coordinates
    3,925,797 3,926,399

    The protein

    Structure

  • [PDB|5CNW] (from Deinococcus radiodurans, 34% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|3985F88334D7B034A66473C5BB39188AB61A65F6|efeB]-[gene|65FC8F21D8927C231B55E8693BD29F052A830AF6|ywbO]
    description
    [Pubmed|18179421]

    sigma factors

  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|9683469], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]
  • [protein|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX]: sigma factor, in [regulon|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX regulon]

    • regulation

  • induced upon iron starvation ([protein|search|Fur]) [Pubmed|12354229]
    • view in new tab

    genes
    [gene|65FC8F21D8927C231B55E8693BD29F052A830AF6|ywbO]
    description
    [Pubmed|9353933]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B674 (ywbO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1673 NBRP B. subtilis, Japan]
  • BKE38250 ([gene|65FC8F21D8927C231B55E8693BD29F052A830AF6|ywbO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATAATCTCCTTTCATA, downstream forward: _UP4_TAAGGAAAAAGCTCTCGATA
  • BKK38250 ([gene|65FC8F21D8927C231B55E8693BD29F052A830AF6|ywbO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATAATCTCCTTTCATA, downstream forward: _UP4_TAAGGAAAAAGCTCTCGATA

    • References

  • 9353933,18179421,9683469