ydfR [2019-03-05 18:03:03]

unknown

locus: BSU05530

pI: 10.37

mw: 25.02 kDa

protein length: 225 aa

gene length: 678 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 600,229 600,906

The protein

Protein family

• [SW|UPF0702 family] (according to Swiss-Prot)

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|65EAA88A18FD7E11ED7ACAF8026E088ACD9EA303|ydfR]
  description: [Pubmed|16497325]

  sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|16497325], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

  regulation

  • expressed during sporulation in the forespore ([protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]) [Pubmed|16497325]
  • strongly expressed during oligotrophic growth [pubmed|30792386]

Biological materials

Mutant

• MGNA-C155 (ydfR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2153 NBRP B. subtilis, Japan]
• BKE05530 ([gene|65EAA88A18FD7E11ED7ACAF8026E088ACD9EA303|ydfR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05530 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTGTCCTGAACCGAAC, downstream forward: _UP4_TAACAAAAGGCGCTTGTGGC
• BKK05530 ([gene|65EAA88A18FD7E11ED7ACAF8026E088ACD9EA303|ydfR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05530 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTGTCCTGAACCGAAC, downstream forward: _UP4_TAACAAAAGGCGCTTGTGGC

References

• 16497325