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yoaE [2019-09-03 09:45:17]
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yoaE [2019-09-03 09:45:17]

formate dehydrogenase
locus
BSU_18570
pI
7.33
mw
76.06 kDa
protein length
680 aa Sequence Blast
gene length
2043 bp Sequence Blast
function
unknown
product
formate dehydrogenase
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.4|Electron transport/ other/ based on similarity]

    • Gene

    Coordinates
    2,025,400 2,027,442

    The protein

    Protein family

  • [SW|prokaryotic molybdopterin-containing oxidoreductase family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|FEE1952DFA3D6A5E2DC108B3B203B526642E2C68|YyaE]

    • [SW|Cofactors]

  • Fe-S cluster [pubmed|29292548]

    • Structure

  • [PDB|2VPW] (from Thermus thermophilus, 25% identity) [pubmed|18536726]

    • Expression and Regulation

    Operons

    genes
    [gene|628CCADB3C9A5F8A128C44ADE1DFDC2FC6B3CD01|yoaE]-[gene|78B66D5B9848D8247D8B9A0DE8923F50F8FCDB46|yoaF]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A836 (yoaE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/836 NBRP B. subtilis, Japan]
  • BKE18570 ([gene|628CCADB3C9A5F8A128C44ADE1DFDC2FC6B3CD01|yoaE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE18570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGGCCCAGTTCCTCTCTC, downstream forward: _UP4_TGAAAAATAATGAAACCCGG
  • BKK18570 ([gene|628CCADB3C9A5F8A128C44ADE1DFDC2FC6B3CD01|yoaE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK18570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGGCCCAGTTCCTCTCTC, downstream forward: _UP4_TGAAAAATAATGAAACCCGG

    • References

    Research papers

  • 18536726