ywcJ [2019-01-04 14:09:26]

similar to hydrogen sulphide channel

locus: BSU38060

pI: 7.68

mw: 28.31 kDa

protein length: 256 aa

gene length: 768 bp

function: unknown

product: unknown

essential: no

synonyms: ipa-48r

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.8|Uptake of other small ions]
• [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.2|Respiration] → [category|SW 2.1.2.2|Anaerobic respiration]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 3,905,333 → 3,906,103

The protein

Paralogous protein(s)

• [protein|FA18A10769974D392247FB32A0891AE74DF248A0|YrhG]

Structure

• [PDB|3TDP] (from Clostridium difficile, 36% identity) [pubmed|20010838]

Expression and Regulation

Operons

• genes: [gene|5FB51BA52819AEB4E6408A096B107ACB533C611A|ywcJ]
  description: [pubmed|22383849]

  regulatory mechanism

  • [protein|B5EF521437323EF43F08E5EFDB5C798616CA499A|Rex]: repression, [Pubmed|16207915], in [regulon|B5EF521437323EF43F08E5EFDB5C798616CA499A|Rex regulon]

Biological materials

Mutant

• MGNA-B672 (ywcJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1671 NBRP B. subtilis, Japan]
• BKE38060 (Δ[gene|5FB51BA52819AEB4E6408A096B107ACB533C611A|ywcJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38060 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTCTTTTCCTGCTTTC, downstream forward: _UP4_TAAAAAAACTTCCAGAGATC
• BKK38060 (Δ[gene|5FB51BA52819AEB4E6408A096B107ACB533C611A|ywcJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38060 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTCTTTTCCTGCTTTC, downstream forward: _UP4_TAAAAAAACTTCCAGAGATC

References

• 16207915,16207915,20010838