SubtiBank SubtiBank
ywcJ
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ywcJ

similar to nitrate channel
locus
BSU_38060
pI
7.68
mw
28.31 kDa
protein length
256 aa Sequence Blast
gene length
771 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ipa-48r
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.8|Uptake of other small ions]
  • [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.2|Respiration] → [category|SW 2.1.2.2|Anaerobic respiration]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,905,333 3,906,103

    The protein

    Protein family

  • FNT transporter (TC 2.A.44) family (with [protein|FA18A10769974D392247FB32A0891AE74DF248A0|YrhG], according to UniProt)

    • Paralogous protein(s)

  • [protein|FA18A10769974D392247FB32A0891AE74DF248A0|YrhG]

    • Structure

  • [PDB|3TDP] (from Clostridium difficile, 36% identity) [pubmed|20010838]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|5FB51BA52819AEB4E6408A096B107ACB533C611A|ywcJ]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|B5EF521437323EF43F08E5EFDB5C798616CA499A|Rex]: repression, [Pubmed|16207915], in [regulon|B5EF521437323EF43F08E5EFDB5C798616CA499A|Rex regulon]
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    Biological materials

    Mutant

  • MGNA-B672 (ywcJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1671 NBRP B. subtilis, Japan]
  • BKE38060 ([gene|5FB51BA52819AEB4E6408A096B107ACB533C611A|ywcJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38060 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTCTTTTCCTGCTTTC, downstream forward: _UP4_TAAAAAAACTTCCAGAGATC
  • BKK38060 ([gene|5FB51BA52819AEB4E6408A096B107ACB533C611A|ywcJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38060 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTCTTTTCCTGCTTTC, downstream forward: _UP4_TAAAAAAACTTCCAGAGATC

    • References

  • 16207915,16207915,20010838