SubtiBank SubtiBank
ysfE [2019-09-04 10:15:13]
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ysfE [2019-09-04 10:15:13]

unknown
locus
BSU_28700
pI
4.32
mw
8.69 kDa
protein length
80 aa Sequence Blast
gene length
243 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    2,935,967 2,936,209

    Expression and Regulation

    Operons

    genes
    [gene|F93E473C06669DE604EC027236C79E5450F53720|cstA]-[gene|5E483479E65CF5E648A88F3B9029CCE555B27898|ysfE]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|22900538], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|22900538], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]

    • regulation

  • repressed by glucose (3.4-fold) ([protein|search|CcpA]) [Pubmed|12850135,22900538]
    • view in new tab

    genes
    [gene|5E483479E65CF5E648A88F3B9029CCE555B27898|ysfE]
    description
    [Pubmed|8969504]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B026 (ysfE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1025 NBRP B. subtilis, Japan]
  • BKE28700 ([gene|5E483479E65CF5E648A88F3B9029CCE555B27898|ysfE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE28700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCGTAGACCCTGTAT, downstream forward: _UP4_TAACGCACAAAAGCCCAAAA
  • BKK28700 ([gene|5E483479E65CF5E648A88F3B9029CCE555B27898|ysfE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK28700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCGTAGACCCTGTAT, downstream forward: _UP4_TAACGCACAAAAGCCCAAAA

    • References

  • 8969504,22383849,22900538