ygzD [2019-08-16 09:49:48]

similar to transcription regulator ([SW|Xre family])

locus: BSU_08899

pI: 7.83

mw: 7.60 kDa

protein length: 66 aa

gene length: 201 bp

function: unknown

product: putative HTH-type transcriptional regulator

essential: -

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 966,671 966,871

The protein

Protein family

• [SW|Xre family]

Structure

• [PDB|1UTX] (from Enterococcus faecalis, 41% identity) [pubmed|15359276]

Expression and Regulation

Operons

• genes: [gene|5DB65F7EE4EFADFB0B46C2EE5726D4B9FA9D85E9|ygzD]-[gene|FFC5766E471A155D3C5C0DB3A9DA46BE24781965|ygaO]
  description: [pubmed|22383849]

Biological materials

Mutant

• BKE08899 ([gene|5DB65F7EE4EFADFB0B46C2EE5726D4B9FA9D85E9|ygzD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08899 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATGACGTCTGTCCCCT, downstream forward: _UP4_TTTTGGTTAGAGGAGGAAAA
• BKK08899 ([gene|5DB65F7EE4EFADFB0B46C2EE5726D4B9FA9D85E9|ygzD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08899 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATGACGTCTGTCCCCT, downstream forward: _UP4_TTTTGGTTAGAGGAGGAAAA

References

• 23504016,15359276