yetA

similar to exo-rhamnogalacturonan lyase

locus: BSU_07090

pI: 6.09

mw: 97.39 kDa

protein length: 857 aa

gene length: 2574 bp

function: utilization of rhamnogalacturonan

product: putative exo-rhamnogalacturonan lyase

essential: no

synonyms

Genomic Context

categories

• [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]

Gene

Coordinates: 776,834 779,407

The protein

Structure

• [PDB|5XQG] (from Penicillium chrysogenum, 33% identity) [pubmed|29574769]

Biological materials

Mutant

• MGNA-B456 (yetA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1455 NBRP B. subtilis, Japan]
• BKE07090 ([gene|5D709A74B628A23B3727BF1657168DB3E338AE49|yetA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07090 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCTCTCCCTCCATA, downstream forward: _UP4_TAACAGCCGGAATTTCATAG
• BKK07090 ([gene|5D709A74B628A23B3727BF1657168DB3E338AE49|yetA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07090 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTCTCTCCCTCCATA, downstream forward: _UP4_TAACAGCCGGAATTTCATAG

References

Research papers

• 29574769