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ybfG [2018-05-30 13:09:09]
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ybfG [2018-05-30 13:09:09]

putative pepdidoglycan binding protein
locus
BSU02200
pI
4.69
mw
79.05 kDa
protein length
732 aa Sequence Blast
gene length
2196 bp Sequence Blast
function
unknown
product
putative pepdidoglycan binding protein
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.6|Cell wall/ other/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    239,644 → 241,842

    The protein

    Protein family

  • fadG family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|0264C72F95D53F0211B52753DA37B4A8C0E982D2|FadG]

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]-[gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF]-[gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]
    description
    [Pubmed|22383849]

    regulation

  • the mRNA is processed between [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG] and [gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]
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    Biological materials

    Mutant

  • MGNA-B968 (ybfG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1967 NBRP B. subtilis, Japan]
  • BKE02200 (Δ[gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGATTCCTCCTTTGT, downstream forward: _UP4_TAACTTTAATACAAAACTGC
  • BKK02200 (Δ[gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGATTCCTCCTTTGT, downstream forward: _UP4_TAACTTTAATACAAAACTGC