yddQ [2019-06-04 09:28:21]

similar to isochorismatase

locus: BSU05070

pI: 5.69

mw: 19.78 kDa

protein length: 180 aa

gene length: 543 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 552,616 553,158

The protein

Protein family

• [SW|Isochorismatase family] (according to UniProt)

Paralogous protein(s)

• [protein|CF663A76026F915FFE38EE924C7E354A49607F90|YrdC]

Structure

• [PDB|3LQY] (from Oleispira antarctica, 47% identity) [pubmed|22350524]

Biological materials

Mutant

• MGNA-C125 (yddQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2123 NBRP B. subtilis, Japan]
• BKE05070 ([gene|5CE3A1F611563E09B3C4657E56397F44F39209B3|yddQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCACCTCTTAAAA, downstream forward: _UP4_TAAAAGAATTTCCTGCGCGA
• BKK05070 ([gene|5CE3A1F611563E09B3C4657E56397F44F39209B3|yddQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCACCTCTTAAAA, downstream forward: _UP4_TAAAAGAATTTCCTGCGCGA

References

Research papers

• 22350524
• 22468594