yvrN [2018-05-04 18:09:18]

similar to [SW|ABC transporter] (membrane protein)

locus: BSU33260

pI: 4.86

mw: 44.95 kDa

protein length: 416 aa

gene length: 1248 bp

function: unknown

product: [SW|ABC transporter] (membrane protein)

essential: no

synonyms: yziB,yvrM

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.2|Exporters] → [category|SW 1.2.1.2.6|Exporters of unknown function]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 3,412,128 → 3,413,357

The protein

Protein family

• ABC-4 integral membrane protein family (according to Swiss-Prot)

Paralogous protein(s)

• [protein|9680326BAA94A503E2A5C6F0A2479AE0B0467B4C|YknZ]

[SW|Localization]

• cell membrane (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|7D334BBF7628D1DA001727CF7BEDB4EFA7FF88BA|yvrP]-[gene|0F8048267EC038D8CF673317D969BA27735473A7|yvrO]-[gene|5AEDC5B857537B7D2A2637C0BC5BE78FD09A66B3|yvrN]
  description: [Pubmed|20817675]

  regulatory mechanism

  • [protein|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK]: activation, [Pubmed|11948146], in [regulon|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

Biological materials

Mutant

• MGNA-B056 (yvrN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1055 NBRP B. subtilis, Japan]
• BKE33260 (Δ[gene|5AEDC5B857537B7D2A2637C0BC5BE78FD09A66B3|yvrN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33260 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGATTGAAAGGAGATTCGAA, downstream forward: _UP4_TAAAAAGAACGCATCCAATT
• BKK33260 (Δ[gene|5AEDC5B857537B7D2A2637C0BC5BE78FD09A66B3|yvrN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33260 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGATTGAAAGGAGATTCGAA, downstream forward: _UP4_TAAAAAGAACGCATCCAATT

References

• 10092453,11948146,20817675