SubtiBank SubtiBank
yydK [2019-08-28 09:03:21]
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yydK [2019-08-28 09:03:21]

similar to transcriptional regulator ([SW|GntR family])
locus
BSU_40130
pI
5.19
mw
27.13 kDa
protein length
236 aa Sequence Blast
gene length
711 bp Sequence Blast
function
unknown
product
transcriptional regulator ([SW|GntR family])
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    4,123,193 4,123,903

    The protein

    Protein family

  • [SW|GntR family] of transcription factors

    • Structure

  • [PDB|3BWG]

    • Expression and Regulation

    Operons

    genes
    [gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]-[gene|D29C8EF4F415C68A90DF693AB1AC12537CE87298|yyzN]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B806 (yydK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1805 NBRP B. subtilis, Japan]
  • BKE40130 ([gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCATTCCTCATTTAT, downstream forward: _UP4_TAGGGCTCTTCACTACGGTA
  • BKK40130 ([gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCATTCCTCATTTAT, downstream forward: _UP4_TAGGGCTCTTCACTACGGTA

    • References

  • 23504016