SubtiBank SubtiBank
yhgD [2018-09-13 16:44:55]
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yhgD [2018-09-13 16:44:55]

similar to transcriptional regulator ([SW|TetR family])
locus
BSU10150
pI
7.24
mw
21.65 kDa
protein length
191 aa Sequence Blast
gene length
573 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
yixD
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    1,089,755 → 1,090,330

    The protein

    Protein family

  • [SW|TetR family]

    • Structure

  • [PDB|5K7F] (24% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|591C37CE3A583ADFC3006A8D1C9D07FA4F8F624C|yhgD]-[gene|8CA084B7BAA4969534DFEFBAFE31D25125354630|yhgE]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B504 (yhgD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1503 NBRP B. subtilis, Japan]
  • BKE10150 (Δ[gene|591C37CE3A583ADFC3006A8D1C9D07FA4F8F624C|yhgD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE10150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTATTCACCTCGAAAC, downstream forward: _UP4_TAGATAATCCTTTCTCTTTG
  • BKK10150 (Δ[gene|591C37CE3A583ADFC3006A8D1C9D07FA4F8F624C|yhgD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK10150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTATTCACCTCGAAAC, downstream forward: _UP4_TAGATAATCCTTTCTCTTTG

    • References

    Reviews

  • 24006471