SubtiBank SubtiBank
yhcM
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yhcM

general stress protein
locus
BSU_09140
pI
9.90
mw
16.89 kDa
protein length
151 aa Sequence Blast
gene length
456 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]

    • Gene

    Coordinates
    988,417 988,872

    Expression and Regulation

    Operons

    genes
    [gene|536B5EEE4EEAF2E3789B298B477C710F81C5DA2D|yhcM]
    description
    [Pubmed|12480901]

    sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|12480901,15699190], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|15699190], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]
  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • induced by stress ([protein|search|SigB]) [Pubmed|15805528]
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    additional information

  • the mRNA belongs to the 46 most abundant mRNA species in dormant spores [pubmed|30782632]

    • Biological materials

    Mutant

  • MGNA-A670 (yhcM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/670 NBRP B. subtilis, Japan]
  • BKE09140 ([gene|536B5EEE4EEAF2E3789B298B477C710F81C5DA2D|yhcM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09140 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATCCCTCCTTTGCAGT, downstream forward: _UP4_TAAAAAAACGTGTAATCCTC
  • BKK09140 ([gene|536B5EEE4EEAF2E3789B298B477C710F81C5DA2D|yhcM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09140 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATCCCTCCTTTGCAGT, downstream forward: _UP4_TAAAAAAACGTGTAATCCTC

    • References

  • 15805528,12480901,15699190,30782632