ydeB

similar to transcriptional regulator

locus: BSU_05130

pI: 7.33

mw: 17.60 kDa

protein length: 153 aa

gene length: 462 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 560,151 560,612

The protein

Protein family

• CarD family (single member, according to UniProt)

Structure

• [PDB|4KBM] (from Mycobacterium tuberculosis, 35%) [pubmed|24055315]

Expression and Regulation

Operons

• genes: [gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-C129 (ydeB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2127 NBRP B. subtilis, Japan]
• BKE05130 ([gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCATCCACCTCCATAT, downstream forward: _UP4_TAGATACATCCCAAAAGATA
• BKK05130 ([gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCATCCACCTCCATAT, downstream forward: _UP4_TAGATACATCCCAAAAGATA

References

• 23543716,24055315