SubtiBank SubtiBank
yneN [2019-09-04 10:36:30]
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yneN [2019-09-04 10:36:30]

similar to thiol:disulfide oxidoreductase
locus
BSU_18010
pI
7.86
mw
19.23 kDa
protein length
170 aa Sequence Blast
gene length
513 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.4|Electron transport/ other/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,929,481 1,929,993

    The protein

    Protein family

  • [SW|Thioredoxin family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|F7D869F77E2275110737EF658C58FA1BF742D73F|ResA], [protein|0B299F9459023306FA91298A6162A09E4A87C3B2|StoA]

    • Structure

  • [PDB|3ERW] ([protein|0B299F9459023306FA91298A6162A09E4A87C3B2|StoA], 34% identity, aa 42-165) [pubmed|19144642]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|E15E9F88B0E03FE8834C646369D2F4B4E713EF41|citB]-[gene|50BBC8AB77B99B9FE5B8A8FE906D39DFEA4ED652|yneN]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|1310745], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [Pubmed|12591885], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]
  • [protein|FE15A41A58A8177280817CA3825764C39185021A|CcpC]: repression, (molecular inducer: citrate) [pubmed|10656796] [pubmed|12100558], in [regulon|FE15A41A58A8177280817CA3825764C39185021A|CcpC regulon]
  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|12100558], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]

    • regulation

  • expressed upon transition into the stationary phase ([protein|search|AbrB]) [Pubmed|12591885], indirect negative regulation by [protein|search|AbrB] [Pubmed|20817675]
    • view in new tab

    Other regulations

  • [protein|CE542AE1A32CCD1ABB259E6159F7A37A8078E189|FsrA]: translation repression, [Pubmed|18697947]

    • Biological materials

    Mutant

  • MGNA-B392 (yneN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1391 NBRP B. subtilis, Japan]
  • 1A921 ( ''yneN''::''erm''), [Pubmed|15342593], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A921&Search=1A921 BGSC]
  • BKE18010 ([gene|50BBC8AB77B99B9FE5B8A8FE906D39DFEA4ED652|yneN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE18010 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGCCACCTCCGCAGCA, downstream forward: _UP4_TAGATTCAGTTTTTTTTATA
  • BKK18010 ([gene|50BBC8AB77B99B9FE5B8A8FE906D39DFEA4ED652|yneN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK18010 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGCCACCTCCGCAGCA, downstream forward: _UP4_TAGATTCAGTTTTTTTTATA

    • References

  • 22383849,15342593,19144642