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ykzR
Genomic Context
categories
[category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]Gene
Coordinates
1,446,317 1,446,568
The protein
Protein family
[SW|Glycosyl hydrolase 18 family] (according to UniProt)Structure
[PDB|4S3K] (from B. megaterium, 31% identity) [pubmed|26190134]additional information
Although related to the glycosyl hydrolase 18 family, lacks the conserved Glu active site at position 30, which is relaced by a Lys residue, suggesting it has no glycosidase activity (according to UniProt)Expression and Regulation
Operons
genes
[gene|FC4C5377EF1D794DCB19D0A8AFE958B84BD9C8BE|ykvP]-[gene|E8311435A86835799E9093DD9CF3733CFFF18DCC|ykzQ]-[gene|BC8CBFF0C2F3C2BEE3275E2CB65D41F2AFC0A1CD|ykvQ]-[gene|4FDAD5E5660EDB346A37C1F41BD8B7B66561E529|ykzR]
description
[Pubmed|11011148,22383849]
sigma factors
[protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|11011148,15699190], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]regulation
expressed late during sporulation in the mother cell ([protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]) [Pubmed|11011148,15699190]view in new tabBiological materials
Mutant
BKE13799 ([gene|4FDAD5E5660EDB346A37C1F41BD8B7B66561E529|ykzR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE13799 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTTGGTGTCAAAAATAATTG, downstream forward: _UP4_TAATGATTTATAGTTCAGAABKK13799 ([gene|4FDAD5E5660EDB346A37C1F41BD8B7B66561E529|ykzR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK13799 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTTGGTGTCAAAAATAATTG, downstream forward: _UP4_TAATGATTTATAGTTCAGAAReferences