yhaZ [2018-09-12 18:01:32]

similar to alkyl purine DNA glycosylase

locus: BSU09810

pI: 9.08

mw: 41.65 kDa

protein length: 357 aa

gene length: 1071 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.6|DNA repair/ recombination/ based on similarity]

Gene

Coordinates: 1,055,143 → 1,056,216

The protein

Structure

• [PDB|5VHV] (from Pseudomonas flourescens, 41% identity)

Expression and Regulation

Operons

• genes: [gene|4873DC24E73F5677AF5C4947B21199904C3EB394|yhaZ]
  description: [Pubmed|16267290]

  regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]

  regulation

  • induced by DNA damage ([protein|search|LexA]) [Pubmed|16267290]

  additional information

  • A [protein|search|ncRNA] is predicted between '[protein|search|yhaZ]' and '[protein|search|yhaX]' [PubMed|20525796]

Biological materials

Mutant

• MGNA-A677 (yhaZ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/677 NBRP B. subtilis, Japan]
• BKE09810 (Δ[gene|4873DC24E73F5677AF5C4947B21199904C3EB394|yhaZ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09810 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATAAACACCGCTTTTTC, downstream forward: _UP4_TGAGTGAATAAAAAATCCCT
• BKK09810 (Δ[gene|4873DC24E73F5677AF5C4947B21199904C3EB394|yhaZ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09810 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATAAACACCGCTTTTTC, downstream forward: _UP4_TGAGTGAATAAAAAATCCCT

References

Reviews

• 22933559

Original publications

• 16267290,20525796