SubtiBank SubtiBank
yxlH [2019-06-26 07:58:29]
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yxlH [2019-06-26 07:58:29]

similar to multidrug-efflux transporter
locus
BSU38640
pI
9.02
mw
43.80 kDa
protein length
400 aa Sequence Blast
gene length
1203 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.14|Resistance against toxins/ antibiotics/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,966,745 3,967,947

    The protein

    Protein family

  • [SW|major facilitator superfamily] (according to UniProt)
  • TCR/tet family (according to Swiss-Prot)

    • Structure

  • [PDB|3WDO] (26% identity) [pubmed|23950222]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|43917869D4E75015CEA23109E8F97DFFECD39C14|yxlH]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B754 (yxlH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1753 NBRP B. subtilis, Japan]
  • BKE38640 ([gene|43917869D4E75015CEA23109E8F97DFFECD39C14|yxlH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTATCTCTCCACCCCT, downstream forward: _UP4_GCGCAAAAACGTAACATGAT
  • BKK38640 ([gene|43917869D4E75015CEA23109E8F97DFFECD39C14|yxlH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTATCTCTCCACCCCT, downstream forward: _UP4_GCGCAAAAACGTAACATGAT

    • References

    Research papers

  • 23950222