SubtiBank SubtiBank
yxkD [Thu Dec 22 2016 10:05:58 GMT+0100 (CET)]
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yxkD [Thu Dec 22 2016 10:05:58 GMT+0100 (CET)]

unknown
locus
BSU38840
pI
8.00
mw
30.00 kDa
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • [SW|Categories] containing this gene/protein

  • [SW|proteins of unknown function], [SW|membrane proteins]

    • Gene

    Coordinates on the chromosome (coding sequence)
    3,987,927 -> 3,988,763

    The protein

    [SW|Localization]

  • membrane (according to UniProt)

    • Expression and Regulation

    Operon

  • ''yxkD'' [Pubmed|10746760]

    • Regulation

  • induced in the presence of guanidine ([SW|ykkC riboswitch]) [Pubmed|27989440]

    • Regulatory mechanism

  • [SW|ykkC riboswitch]: binding of the ligand guanidine causes transcriptional antitermination [Pubmed|27989440,15096624]

    • Additional information

  • term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of ''yxkD'' [Pubmed|27120414]

    • Biological materials

    Mutant

  • MGNA-B738 (yxkD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1737 NBRP B. subtilis, Japan]

    • References

  • 15096624,10746760,21317561,27120414,27989440