ybfE

unknown

locus: BSU_02180

pI: 9.13

mw: 10.90 kDa

protein length: 94 aa

gene length: 285 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 238,164 238,448

The protein

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]-[gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF]-[gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]
  description: [Pubmed|22383849]

  regulation

  • the mRNA is processed between [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG] and [gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]

Biological materials

Mutant

• MGNA-B966 (ybfE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1965 NBRP B. subtilis, Japan]
• BKE02180 ([gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTAAAGAATACCTTTAAT, downstream forward: _UP4_TAATCTCGAAATCAGAGATG
• BKK02180 ([gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTAAAGAATACCTTTAAT, downstream forward: _UP4_TAATCTCGAAATCAGAGATG