SubtiBank SubtiBank
nrdE [Wed Dec 07 2016 11:31:56 GMT+0100 (CET)]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

nrdE [Wed Dec 07 2016 11:31:56 GMT+0100 (CET)]

ribonucleoside-diphosphate reductase (major subunit), control of DNA/cell mass ratio
locus
BSU17380
pI
5.00
mw
80.00 kDa
function
synthesis of deoxyribonucleoside triphosphates
product
ribonucleoside-diphosphate reductase (major subunit)
essential
yes
ec
1.17.4.1
synonyms

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.5|Nucleotide metabolism] → [category|SW 2.5.2|Biosynthesis/ acquisition of nucleotides] → [category|SW 2.5.2.5|Biosynthesis/ acquisition of nucleotides/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.1|Essential genes]
  • [SW|Categories] containing this gene/protein

  • [SW|biosynthesis/ acquisition of nucleotides], [SW|essential genes]
  • This gene is a member of the following [SW|regulons]

  • [SW|NrdR regulon], [SW|ResD regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    1,868,969 -> 1,871,071

    Phenotypes of a mutant

  • essential [Pubmed|12682299]
  • The protein

    Catalyzed reaction/ biological activity

  • 2'-deoxyribonucleoside diphosphate thioredoxin disulfide H2O = ribonucleoside diphosphate thioredoxin (according to Swiss-Prot)
  • Protein family

  • ribonucleoside diphosphate reductase large chain family (according to Swiss-Prot)
  • Paralogous protein(s)

  • [protein|search|YosN]
  • Effectors of protein activity

  • ATP stimulates CDP reduction. [Pubmed|24401092]
  • dATP at concentrations up to ~10 µM stimulate CDP reduction, while higher concentrations inhibit this activity. [Pubmed|24401092]
  • Structure

  • [PDB|1PEM] (from ''S. typhimurium'', 45% identity) [Pubmed|12818204]
  • [SW|Interactions]

  • [protein|search|NrdE]-[protein|search|NrdF] [Pubmed|16885274]
  • [protein|search|NrdE]-[protein|search|YosR] [Pubmed|24401092]
  • [protein|search|NrdE]-[protein|search|TrxA] [Pubmed|24401092]
  • Additional information

  • subject to Clp-dependent proteolysis upon glucose starvation [PubMed|17981983]
  • Expression and Regulation

    Operon

  • ''[protein|search|nrdI]-[protein|search|nrdE]-[protein|search|nrdF]-[protein|search|ymaB]'' [Pubmed|16885274]
  • [SW|Sigma factor]

  • [protein|search|SigA] [Pubmed|16885274]
  • Regulation

  • expressed under anaerobic conditions ([protein|search|ResD]) [Pubmed|16885274]
  • Regulatory mechanism

  • [protein|search|ResD]: transcription activation [Pubmed|16885274]
  • [SW|NrdR]: transcription repression (predicted) [Pubmed|15949864]
  • Additional information

  • subject to Clp-dependent proteolysis upon glucose starvation [PubMed|17981983]
  • Labs working on this gene/protein

  • [SW|Elisabeth Härtig], Braunschweig, Germany [http://www.tu-braunschweig.de/ifm/abt/jahn/groups/bs Homepage]
  • References

    Reviews

  • 17229208
  • Original Publications

  • 16885274,8969495,24401092,21561096,12818204,15949864