SubtiBank SubtiBank
ywdK [2019-06-12 10:29:36]
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ywdK [2019-06-12 10:29:36]

unknown
locus
BSU37930
pI
9.43
mw
11.89 kDa
protein length
123 aa Sequence Blast
gene length
372 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ipa-61d
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,894,030 3,894,401

    The protein

    Protein family

  • UPF0382 family (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|F267C75289D19D039F6E97F5DABCDFF0B4E4B8FA|ywdI]-[gene|BA4D8EF5B09345E94EEEEB936C803B71340DC5EE|ywdJ]-[gene|386D4F640E987E3752BEBE57BF25DF487D12EFCE|ywdK]
    description
    [Pubmed|12823818]

    regulatory mechanism

  • [protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA]: repression, [Pubmed|12823818], in [regulon|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA regulon]

    • regulation

  • repressed in the absence of good nitrogen sources (glutamine or ammonium) ([protein|search|TnrA]) [Pubmed|12823818]
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    Biological materials

    Mutant

  • MGNA-B237 (ywdK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1236 NBRP B. subtilis, Japan]
  • BKE37930 ([gene|386D4F640E987E3752BEBE57BF25DF487D12EFCE|ywdK]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE37930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTATCTCTCCCGCCTTT, downstream forward: _UP4_TAAACAAAAAAGCCAATCCT
  • BKK37930 ([gene|386D4F640E987E3752BEBE57BF25DF487D12EFCE|ywdK]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK37930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTATCTCTCCCGCCTTT, downstream forward: _UP4_TAAACAAAAAAGCCAATCCT

    • References

  • 12823818,25755103