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ycdA [Tue Dec 13 2016 11:16:30 GMT+0100 (CET)]
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ycdA [Tue Dec 13 2016 11:16:30 GMT+0100 (CET)]

lipoprotein, required for swarming motility
locus
BSU02780
pI
4.00
mw
39.00 kDa
function
swarming motility
product
lipoprotein
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.1|Motility and chemotaxis] → [category|SW 4.1.1.4|Motility and chemotaxis/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • [SW|Categories] containing this gene/protein

  • [SW|membrane proteins], [SW|motility and chemotaxis]

    • This gene is a member of the following [SW|regulons]

  • [SW|Abh regulon], [SW|AbrB regulon], [SW|DegU regulon]

    • Gene

    Coordinates on the chromosome (coding sequence)
    299,438 -> 300,502

    Phenotypes of a mutant

  • reduced swarming motility [Pubmed|22496484]

    • The protein

    Structure

  • [PDB|4R4G]

    • [SW|Localization]

  • lipoprotein [Pubmed|22496484]
  • membrane associated [Pubmed|18763711]

    • Expression and Regulation

    Operon

  • ''ycdA'' [Pubmed|22496484]

    • Regulatory mechanism

  • [protein|search|Abh] and [protein|search|AbrB]: synergistic transcription repression [Pubmed|20817675]
  • [protein|search|DegU]-P: transcription activation [Pubmed|22496484]
  • [protein|search|SwrA]: modulation of [protein|search|DegU]-P activity at the ''ycdA'' promoter [Pubmed|22496484]

    • Additional information

  • term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of ''ycdA'' [Pubmed|27120414]

    • References

  • 18763711,20817675,20525796,22496484,27120414