yitM [2019-10-18 09:38:56]

unknown

locus: BSU_11040

pI: 4.77

mw: 21.32 kDa

protein length: 194 aa

gene length: 585 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.17|Toxins, antitoxins and immunity against toxins] → [category|SW 4.3.17.3|Toxins, antitoxins and immunity/ Additional genes]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 1,182,448 1,183,032

The protein

Paralogous protein(s)

• [protein|820635420B3980B620F3E3D7ACF7EDE9DC6275AD|SdpC]

[SW|Localization]

• membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]
  description: [pubmed|22383849]

• genes: [gene|FBA412B070CE4FFE554F2657E0F745EF5C853B8A|yitP]-[gene|81E929FD7F66A996300C8412BE172883C262BD67|yitO]-[gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]
  description: [Pubmed|17850253]

  regulatory mechanism

  • [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]: activation, [pubmed|17850253], in [regulon|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU regulon]

  regulation

  • induced in biofilms ([SW|DegU]) [Pubmed|17850253]

Biological materials

Mutant

• MGNA-B213 (yitM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1212 NBRP B. subtilis, Japan]
• BKE11040 ([gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE11040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACTAGAAACGCCT, downstream forward: _UP4_TAGACATAAAAAAACGGCTC
• BKK11040 ([gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK11040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACTAGAAACGCCT, downstream forward: _UP4_TAGACATAAAAAAACGGCTC

References

Research papers

• 31622331,17850253