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ytrC [2018-05-04 16:06:30]
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ytrC [2018-05-04 16:06:30]

ABC transporter (hydrophobic protein, probably channel protein)
locus
BSU30440
pI
7.74
mw
36.80 kDa
protein length
328 aa Sequence Blast
gene length
984 bp Sequence Blast
function
unknown
product
ABC transporter (hydrophobic protein, probably channel protein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.5|Cold stress proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,116,996 → 3,117,982

    The protein

    Protein family

  • ABC-5 integral membrane protein family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|YtrD]

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|DCFA6025F7B4D7C5F6FB8107DDA6538CED33084D|ytrG]-[gene|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|ytrA]-[gene|BF81AD95FE6CF7662D012EF293C769E80C093D34|ytrB]-[gene|31977FDC549E45911C333623DCA3D8941A93D8FF|ytrC]-[gene|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|ytrD]-[gene|4FE6A51A0D9BBBF574EA2EF18B95B5BFC0A64CCB|ytrE]-[gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]
    description
    [Pubmed|10986249,21856850]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|10986249,21856850], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA]: repression, [Pubmed|10986249,21856850], in [regulon|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA regulon]

    • regulation

  • expressed early in the stationary phase [Pubmed|10986249]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B539 (ytrC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1538 NBRP B. subtilis, Japan]
  • BKE30440 (Δ[gene|31977FDC549E45911C333623DCA3D8941A93D8FF|ytrC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30440 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTCTCGATAGAGGAGACCTC, downstream forward: _UP4_TAAGAAATGCCTTAGGTTTG
  • BKK30440 (Δ[gene|31977FDC549E45911C333623DCA3D8941A93D8FF|ytrC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30440 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTCTCGATAGAGGAGACCTC, downstream forward: _UP4_TAAGAAATGCCTTAGGTTTG

    • References

  • 10986249,10092453,12399512