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ydaD [2018-02-13T02:14:05.000Z]
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ydaD [2018-02-13T02:14:05.000Z]

general stress protein, similar to alcohol dehydrogenase
Locus
BSU04190
Isoelectric point
4.78
Molecular weight
30.93 kDa
Protein length
286 aa Sequence Blast
Gene length
858 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms

Genomic Context

      
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Categories containing this gene/protein

Gene

Coordinates
471,709 → 472,569

The protein

Protein family

  • short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
  • Paralogous protein(s)

  • YcdF (69%), YhxC (63,5%), YhxD (48,8%), Gdh (35,8%), YcdF (31.4%), YkvO (37.5%),
  • BacC (34.3%), FabG (31.1%), KduD (36.7%), YhdF
  • Structure

  • 3I30 (from Bacillus Anthracis, 61% identity)
  • Expression and Regulation

    Operons

    Genes
    Description

    Sigma factors

  • SigB: sigma factor, PubMed, in SigB regulon
  • Regulation

  • induced by stress (SigB) PubMed
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    Description

    Sigma factors

  • SigB: sigma factor, PubMed, in SigB regulon
  • Regulation

  • induced by stress (SigB) PubMed
  • view in new tab

    Biological materials

    Mutant

  • MGNA-C086 (ydaD::erm), available at the NBRP B. subtilis, Japan
  • BKE04190 (ΔydaD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGATGATTCTCCTCCTTT, downstream forward: _UP4_ACGACATAAGAGGGAGTGAG
  • BKK04190 (ΔydaD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGATGATTCTCCTCCTTT, downstream forward: _UP4_ACGACATAAGAGGGAGTGAG
  • References

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