SubtiBank SubtiBank
yheN [2018-02-08T16:51:02.000Z]
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yheN [2018-02-08T16:51:02.000Z]

putative polysaccharide deacetylase
locus
BSU09660
pI
8.61
mw
31.58 kDa
protein length
282 aa Sequence Blast
gene length
846 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    1,040,861 → 1,041,709

    The protein

    Paralogous protein(s)

  • [protein|603E226CE488A25C4E28A6A7363CCD65BE64BB21|PdaC] (33%)

    • [SW|Domains]

  • NodB domain (aa 85-271) (according to UniProt)

    • Structure

  • [PDB|2C1G] (the NodB domain, from Streptococcus pneumoniae, 37% identity) [pubmed|16221761]

    • Expression and Regulation

    Operons

    genes
    [gene|2E2D21BEA164C7EB93B6A3F3C990ABD475920A81|yheN]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A708 (yheN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/708 NBRP B. subtilis, Japan]
  • BKE09660 (Δ[gene|2E2D21BEA164C7EB93B6A3F3C990ABD475920A81|yheN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09660 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAACAATCTCTCCATTGG, downstream forward: _UP4_TAAAAAAGTGAGGCGCATAA
  • BKK09660 (Δ[gene|2E2D21BEA164C7EB93B6A3F3C990ABD475920A81|yheN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09660 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAACAATCTCTCCATTGG, downstream forward: _UP4_TAAAAAAGTGAGGCGCATAA

    • References

    Research papers

  • 16221761