ydeC

similar to transcription factor (AraC family)

locus: BSU_05150

pI: 6.87

mw: 34.07 kDa

protein length: 291 aa

gene length: 876 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]

Gene

Coordinates: 561,514 562,389

The protein

Protein family

• [SW|AraC family]

[SW|Domains]

• [SW|HTH araC/xylS-type domain] (aa 191-289) (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|24A86A4846187E6026A2B7645DC4B7C70908942E|ydeC]-[gene|CBEB1C62D727CF320E82C3ED636894B50F11E0AE|ydzE]
  description: [pubmed|22383849]

  sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|11532142], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

Biological materials

Mutant

• MGNA-C079 (ydeC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2077 NBRP B. subtilis, Japan]
• BKE05150 ([gene|24A86A4846187E6026A2B7645DC4B7C70908942E|ydeC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTGACTTCACACCTCA, downstream forward: _UP4_TAAAGTTTATTCTATTAATA
• BKK05150 ([gene|24A86A4846187E6026A2B7645DC4B7C70908942E|ydeC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTGACTTCACACCTCA, downstream forward: _UP4_TAAAGTTTATTCTATTAATA

References

• 23504016