SubtiBank SubtiBank
ydcF [2018-07-17 19:15:58]
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ydcF [2018-07-17 19:15:58]

unknown
locus
BSU04750
pI
8.07
mw
11.10 kDa
protein length
97 aa Sequence Blast
gene length
291 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    524,492 → 524,785

    The protein

    Paralogous protein(s)

  • [protein|CA4597C6253CCF7D7954686A30AF041808BDF8E5|Gdh]

    • Expression and Regulation

    Operons

    genes
    [gene|20D50DA11B864E6C719CC34BE27C7900893EA054|ydcF]-[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]-[gene|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]
    description
    [pubmed|29240826,22383849]

    regulatory mechanism

  • [protein|B7F5FA5C656D39970959BC857E93B78B1A063098|PamR]: repression, [pubmed|29240826], in [regulon|B7F5FA5C656D39970959BC857E93B78B1A063098|PamR regulon]
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    Biological materials

    Mutant

  • MGNA-C113 (ydcF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2111 NBRP B. subtilis, Japan]
  • BKE04750 (Δ[gene|20D50DA11B864E6C719CC34BE27C7900893EA054|ydcF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTGAAATTGTCCTTTC, downstream forward: _UP4_CATCTTTACGGAGGAGTGAT
  • BKK04750 (Δ[gene|20D50DA11B864E6C719CC34BE27C7900893EA054|ydcF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTGAAATTGTCCTTTC, downstream forward: _UP4_CATCTTTACGGAGGAGTGAT

    • References

  • 12884008,29240826