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bacC [2017-09-28 15:00:52]
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bacC [2017-09-28 15:00:52]

dihydroanticapsin 7-dehydrogenase
locus
BSU37720
pI
4.96
mw
27.17 kDa
protein length
255 aa Sequence Blast
gene length
765 bp Sequence Blast
function
biosynthesis of the antibiotic bacilysin
product
dihydroanticapsin 7-dehydrogenase
essential
no
synonyms
ywfD,ipa-82d
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.6|Additional metabolic pathways] → [category|SW 2.6.6|Miscellaneous metabolic pathways] → [category|SW 2.6.6.1|Biosynthesis of antibacterial compounds]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.15|Biosynthesis of antibacterial compounds]

    • Gene

    Coordinates
    3,872,105 → 3,872,872

    The protein

    Catalyzed reaction/ biological activity

  • oxidation of the C(7)-hydroxyl, penultimate step in bacilysin biosynthesis [Pubmed|23317005]

    • Protein family

  • short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|B6FF689E65906186F3576B378650D713DB84EDDA|YcdF], [protein|3161519994609DA9360ED6E073E4A4C8C6210EFB|YdaD], [protein|0DD474462720CAEE2AE17017BD7CA385238EBC6F|YxbG], [protein|EAEEA4DD9641919830A81185333A2610B964D37C|YhdF], [protein|6047F2493FCE3D2A9BDB1AD88E5926ECEED81036|YhxC], [protein|739B228743BC1FE9E6888E999BC0E4F615E36F9E|YhxD], [protein|4DEFC2998464BF8327578C36A13A10DD277F991E|YkvO]

    • Structure

  • [PDB|5ITV] [pubmed|28158843]

    • Expression and Regulation

    Operons

    genes
    [gene|3F49F4AEFC49C2883EFA60FEB3E77591F184195B|bacA]-[gene|0EEE23875DB720D256D53F00D1AD5EF24B538B27|bacB]-[gene|20A7DBA142F3BF8DCAD9732BD908CE8CC79AA993|bacC]-[gene|2CE0C0484A70EEE40277996CD3D564A84FEAF5B3|bacD]-[gene|4D2AD84E74888EC61E44DE5B8E31812F43250B05|bacE]-[gene|99434727013FCCD6E570AE550560A8546F7F2A41|bacF]
    description
    [Pubmed|12372825]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|19801406], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [Pubmed|12372825,21709425], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|12697329,21709425], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
  • [protein|F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|ScoC]: repression, [Pubmed|19801406], in [regulon|F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|ScoC regulon]

    • regulation

  • expression of the operon is strongly induced at the beginning of [SW|biofilm formation] [pubmed|31113899]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B669 (ywfD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1668 NBRP B. subtilis, Japan]
  • BKE37720 (Δ[gene|20A7DBA142F3BF8DCAD9732BD908CE8CC79AA993|bacC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE37720 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGTTTTATCGGTGAGGTTCA, downstream forward: _UP4_CAATAGAGAAGGAGTGTTTT
  • BKK37720 (Δ[gene|20A7DBA142F3BF8DCAD9732BD908CE8CC79AA993|bacC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK37720 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGTTTTATCGGTGAGGTTCA, downstream forward: _UP4_CAATAGAGAAGGAGTGTTTT

    • References

  • 15609023,12372825,21948839,19801406,28158843