SubtiBank SubtiBank
nrdI [Wed Dec 07 2016 11:31:37 GMT+0100 (CET)]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

nrdI [Wed Dec 07 2016 11:31:37 GMT+0100 (CET)]

flavodoxin, ribonucleoside-diphosphate reductase
locus
BSU17370
pI
8.00
mw
14.00 kDa
function
synthesis of deoxyribonucleoside triphosphates
product
ribonucleoside-diphosphate reductase
essential
yes
synonyms
ymaA

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.5|Nucleotide metabolism] → [category|SW 2.5.2|Biosynthesis/ acquisition of nucleotides] → [category|SW 2.5.2.5|Biosynthesis/ acquisition of nucleotides/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.1|Essential genes]
  • [SW|Categories] containing this gene/protein

  • [SW|biosynthesis/ acquisition of nucleotides], [SW|essential genes]
  • This gene is a member of the following [SW|regulons]

  • [SW|NrdR regulon], [SW|ResD regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    1,868,617 -> 1,869,009

    Phenotypes of a mutant

  • essential [Pubmed|12682299]
  • The protein

    Catalyzed reaction/ biological activity

  • Provides oxidant (O2•-) for assembly of dimanganic-tyrosyl radical (MnIII2-Y•) cofactor in [protein|search|NrdF]. [Pubmed|23402532]
  • Protein family

  • nrdI family (according to Swiss-Prot)
  • Paralogous protein(s)

  • [protein|search|YosM]
  • [SW|Cofactors]

  • FMN [Pubmed|21561096]
  • Structure

  • [PDB|1RLJ]
  • [SW|Interactions]

  • [protein|search|NrdI]-[protein|search|NrdF] [Pubmed|23402532]
  • [protein|search|NrdI]-[protein|search|YumC] [Pubmed|27559930]
  • Expression and Regulation

    Operon

  • ''[protein|search|nrdI]-[protein|search|nrdE]-[protein|search|nrdF]-[protein|search|ymaB]'' [Pubmed|16885274]
  • [SW|Sigma factor]

  • [protein|search|SigA] [Pubmed|16885274]
  • Regulation

  • expressed under anaerobic conditions ([protein|search|ResD]) [Pubmed|16885274]
  • Regulatory mechanism

  • [protein|search|ResD]: transcription activation [Pubmed|16885274]
  • [SW|NrdR]: transcription repression (predicted) [Pubmed|15949864]
  • Additional information

  • A [protein|search|ncRNA] is predicted between '[protein|search|ymzA]' and '[protein|search|nrdI]' [PubMed|20525796]
  • References

    Reviews

  • 17229208
  • Original Publications

  • 27559930,26507228,8969495,21561096,23402532,16885274,12682299,20525796,15949864