SubtiBank SubtiBank
ytcD [2018-04-23 15:18:11]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ytcD [2018-04-23 15:18:11]

[SW|MarR/DUF24 family] transcription regulator
locus
BSU29030
pI
7.76
mw
14.35 kDa
protein length
126 aa Sequence Blast
gene length
378 bp Sequence Blast
function
unknown
product
[SW|MarR/DUF24 family] transcription regulator
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    2,968,260 → 2,968,640

    The protein

    Protein family

  • [SW|MarR/DUF24 family]

    • Structure

  • [PDB|2HZT]

    • Expression and Regulation

    Operons

    genes
    [gene|1E74F0557FF9ECB404B6544831F4E0A162473423|ytcD]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-A120 (ytcD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/120 NBRP B. subtilis, Japan]
  • BKE29030 (Δ[gene|1E74F0557FF9ECB404B6544831F4E0A162473423|ytcD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29030 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACAATCCATTCTCCTCA, downstream forward: _UP4_TAAAGCATGAGGGCAGTCAG
  • BKK29030 (Δ[gene|1E74F0557FF9ECB404B6544831F4E0A162473423|ytcD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29030 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACAATCCATTCTCCTCA, downstream forward: _UP4_TAAAGCATGAGGGCAGTCAG