SubtiBank SubtiBank
ylmC [2019-07-01 09:48:03]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ylmC [2019-07-01 09:48:03]

sporulation protein
locus
BSU15360
pI
5.64
mw
8.62 kDa
protein length
81 aa Sequence Blast
gene length
246 bp Sequence Blast
function
unknown
product
sporulation protein
essential
no
synonyms
thiQ
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    1,608,919 1,609,164

    Phenotypes of a mutant

  • a ''[gene|1D27C5E73571A737B80649BFCF517C5FF136DFFF|ylmC] [gene|AC541AB15B4A2BC345B471BD654299BAEC3E8635|ymxH]'' double mutant has a severe [SW|sporulation] defect (1% sporulation as compared to the wild type or single mutants), the block is at stage III of [SW|sporulation] [Pubmed|23396918]

    • The protein

    Paralogous protein(s)

  • [protein|AC541AB15B4A2BC345B471BD654299BAEC3E8635|YmxH]

    • Expression and Regulation

    Operons

    genes
    [gene|1D27C5E73571A737B80649BFCF517C5FF136DFFF|ylmC]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

    • regulatory mechanism

  • [protein|90DCE4F286D2C151D8BDBF0E024E6BBEC94E2397|SpoIIID]: repression, in [regulon|90DCE4F286D2C151D8BDBF0E024E6BBEC94E2397|SpoIIID regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B170 (ylmC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1169 NBRP B. subtilis, Japan]
  • BKE15360 ([gene|1D27C5E73571A737B80649BFCF517C5FF136DFFF|ylmC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE15360 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCATCACGTCCTTTTT, downstream forward: _UP4_TAAACCTGCTTGTCTGCCGC
  • BKK15360 ([gene|1D27C5E73571A737B80649BFCF517C5FF136DFFF|ylmC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK15360 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCATCACGTCCTTTTT, downstream forward: _UP4_TAAACCTGCTTGTCTGCCGC

    • References

  • 23123912,23396918