SubtiBank SubtiBank
ycnB [2018-02-13T13:06:53.000Z]
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ycnB [2018-02-13T13:06:53.000Z]

similar to multidrug resistance protein
locus
BSU03840
pI
10.83
mw
50.63 kDa
protein length
472 aa Sequence Blast
gene length
1416 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.11|Other exporters]
  • [category|SW 2|Metabolism] → [category|SW 2.5|Nucleotide metabolism] → [category|SW 2.5.3|Metabolism of signalling nucleotides]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    436,036 → 437,454

    The protein

    Protein family

  • EmrB family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|23483430AE0381406EF2349A18CFAE1F14F9B180|LmrB], [protein|93159DC7D5C42CFA54F66F232D73F38957243AB7|YhcA]

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot), membrane associated [Pubmed|18763711]

    • Expression and Regulation

    Operons

    genes
    [gene|C993D176CE1B93A74D34B45DFFE30295245E2BD2|ycnC]-[gene|188742B9A0C95344D32A4C23B9C971660572CF7D|ycnB]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C012 (ycnB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2010 NBRP B. subtilis, Japan]
  • GP1702 (''[gene|188742B9A0C95344D32A4C23B9C971660572CF7D|ycnB]''::''spc''), available in [SW|Jörg Stülke]'s lab
  • GP1703 (''[gene|23483430AE0381406EF2349A18CFAE1F14F9B180|lmrB]''::''aphA3'' ''[gene|188742B9A0C95344D32A4C23B9C971660572CF7D|ycnB]''::''spc''), available in [SW|Jörg Stülke]'s lab
  • BKE03840 (Δ[gene|188742B9A0C95344D32A4C23B9C971660572CF7D|ycnB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GTTCAATACATATCCCTTCT, downstream forward: _UP4_TGATTAACAAAAAAAGAGCC
  • BKK03840 (Δ[gene|188742B9A0C95344D32A4C23B9C971660572CF7D|ycnB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GTTCAATACATATCCCTTCT, downstream forward: _UP4_TGATTAACAAAAAAAGAGCC

    • References

  • 18763711,22383849