SubtiBank SubtiBank
yodQ [2018-02-10T12:30:13.000Z]
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yodQ [2018-02-10T12:30:13.000Z]

putative deacylase
locus
BSU19710
pI
5.41
mw
48.39 kDa
protein length
436 aa Sequence Blast
gene length
1308 bp Sequence Blast
function
unknown
product
putative deacylase
essential
no
synonyms
argE
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    2,141,703 → 2,143,013

    The protein

    Paralogous protein(s)

  • [protein|392921E3C53846236DF75D7585697969B11AF2F3|YlmB]

    • Structure

  • [PDB|3PFO] (from Rhodopseudomonas Palustris 37% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|13DC4296015A28975BC7697F134FB6ECD6B11489|yodT]-[gene|D8A050BF150C6E5B910C24C0E023F0829EC95BAD|yodS]-[gene|138832210AC94B17E081F3D0AF9BCFE3BE63E601|yodR]-[gene|161ADC907D4902001C8751F51CFA762828C26110|yodQ]-[gene|39749B5EADC3C056BAF232E0B586C65B989F7F77|yodP]-[gene|21589FEBDE54C66DE2A3DCFC2D7BF3AEEC84B44C|kamA]-[gene|A4A099EE3368891C2AD6C2D1DCBE7B238227417F|yokU]-[gene|0A33869E05CC9B49699555EA19D0905A55CA35B9|yozE]
    description
    [Pubmed|22383849,14523133]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|14523133], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

    • regulation

  • expressed early during sporuation in the mother cell ([protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]) [Pubmed|14523133]
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    Biological materials

    Mutant

  • BKE19710 (Δ[gene|161ADC907D4902001C8751F51CFA762828C26110|yodQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GTCTTGCATCCTCATTCCCC, downstream forward: _UP4_CTTCATACAGATGGGGAGGA
  • BKK19710 (Δ[gene|161ADC907D4902001C8751F51CFA762828C26110|yodQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GTCTTGCATCCTCATTCCCC, downstream forward: _UP4_CTTCATACAGATGGGGAGGA

    • References

  • 14523133