SubtiBank SubtiBank
ybxF [Mon Jan 18 2016 18:54:41 GMT+0100 (CET)]
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ybxF [Mon Jan 18 2016 18:54:41 GMT+0100 (CET)]

highly expressed protein, similar to ribosomal protein L7AE family, associated with the ribosome during exponential growth, binds K-turns in RNA switches
locus
BSU01090
pI
9.00
mw
8.00 kDa
function
unknown
product
unknown
essential
no
synonyms
ybaB
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.4|Ribosomal proteins]

    • [SW|Categories] containing this gene/protein

  • [SW|translation]

    • This gene is a member of the following [SW|regulons]

  • [SW|stringent response]

    • Gene

    Coordinates on the chromosome (coding sequence)
    129,340 -> 129,588

    The protein

    Catalyzed reaction/ biological activity

  • binds K-turns in [SW|RNA switch]es as they occur in the [protein|search|L-box], the [protein|search|S-box] and the [protein|search|T-box] [Pubmed|22355167]

    • Protein family

  • [SW|ribosomal protein] L7Ae family (according to Swiss-Prot)

    • Structure

  • [PDB|3V7] ([protein|search|YbxF] bound to the [S-box|search|SAM-I riboswitch] aptamer) [Pubmed|22355167]

    • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)

    • Expression and Regulation

    Regulation

  • [protein|search|RelA] dependent downregulation (Class I) during stringent response [Pubmed|11948165]

    • References

  • 11948165,23249744,22355167