yvrE [2018-02-08 10:14:30]

general stress protein, similar to senescence marker protein-30

locus: BSU33200

pI: 4.62

mw: 33.05 kDa

protein length: 292 aa

gene length: 876 bp

function: survival of salt stress

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
• [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

Gene

Coordinates: 3,405,664 → 3,406,542

The protein

Protein family

• SMP-30/CGR1 family (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]
  description: [Pubmed|16306698]

  sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

  regulation

  • induced by stress ([protein|search|SigB]) [Pubmed|15805528]

• genes: [gene|7098319D8E88FDC2A629A3F4A21507FD7A649385|yvrHb]-[gene|96E4470EF4B558F4EC318FEBF58B779BA50DB7E2|yvrG]-[gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-B048 (yvrE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1047 NBRP B. subtilis, Japan]
• BKE33200 (Δ[gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTTACACCTCTTTAG, downstream forward: _UP4_TAAAAAAAACGCATCCGAAA
• BKK33200 (Δ[gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTTACACCTCTTTAG, downstream forward: _UP4_TAAAAAAAACGCATCCGAAA

References

• 15805528,16306698