SubtiBank SubtiBank
yxbG [2019-04-16 13:35:12]
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yxbG [2019-04-16 13:35:12]

general stress protein, similar to glucose 1-dehydrogenase
locus
BSU39840
pI
4.51
mw
29.28 kDa
protein length
273 aa Sequence Blast
gene length
822 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
yxaU
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    4,091,845 4,092,666

    The protein

    Protein family

  • short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|4DEFC2998464BF8327578C36A13A10DD277F991E|YkvO], [protein|6047F2493FCE3D2A9BDB1AD88E5926ECEED81036|YhxC], [protein|739B228743BC1FE9E6888E999BC0E4F615E36F9E|YhxD], [protein|B6FF689E65906186F3576B378650D713DB84EDDA|YcdF], [protein|EAEEA4DD9641919830A81185333A2610B964D37C|YhdF]
  • [protein|20A7DBA142F3BF8DCAD9732BD908CE8CC79AA993|BacC]:
  • [protein|B7B1D28E50244704324920E5A6F110DA8D63F6C0|YxjF]:

    • Structure

  • [PDB|4NBU] ([protein|439B468A13137000FB42E9389391CB4986FFED84|FabG] from Bacillus sp., 42% identity) [pubmed|24212572]

    • Expression and Regulation

    Operons

    genes
    [gene|0DD474462720CAEE2AE17017BD7CA385238EBC6F|yxbG]
    description
    [Pubmed|10746760]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|11544224], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • induced by stress ([protein|search|SigB]) [Pubmed|11544224]
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    Biological materials

    Mutant

  • MGNA-B694 (yxbG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1693 NBRP B. subtilis, Japan]
  • BKE39840 ([gene|0DD474462720CAEE2AE17017BD7CA385238EBC6F|yxbG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATACGAGACCTCCTTT, downstream forward: _UP4_TAAGAGAGGGAGCCCCCTCT
  • BKK39840 ([gene|0DD474462720CAEE2AE17017BD7CA385238EBC6F|yxbG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATACGAGACCTCCTTT, downstream forward: _UP4_TAAGAGAGGGAGCCCCCTCT

    • References

  • 11544224,24212572