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rhiG [2019-05-31 15:18:25]
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rhiG [2019-05-31 15:18:25]

[SW|ABC transporter] (membrane protein) for rhamnose oligosaccharides
locus
BSU06990
pI
9.52
mw
33.32 kDa
protein length
296 aa Sequence Blast
gene length
891 bp Sequence Blast
function
uptake of rhamnose oligosaccharides
product
rhamnose oligosaccharide [SW|ABC transporter]
essential
no
synonyms
yesQ
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    763,875 764,765

    The protein

    Protein family

  • ABC transmembrane type-1 domain (according to Swiss-Prot)

    • Structure

  • [PDB|4TQU] (from Sphingomonas sp., 25% identity) [pubmed|26235029]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|A96A83684E1E6E8705265D3932DA60FF47C23E3B|rhiL]-[gene|2DC415DCC2ECC3B46526108638DDB46C28832041|rhiF]-[gene|0B11FACEB5E96D166AC1EA0E32C68FCDAF8327E4|rhiG]-[gene|8EED04FCE6E2900B729178209FB281F5463B2540|rhiN]
    description
    [Pubmed|33122638]

    regulation

  • induced in colonies growing on steamed soybeans [Pubmed|33122638]
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    Biological materials

    Mutant

  • MGNA-A949 (yesQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/949 NBRP B. subtilis, Japan]
  • BKE06990 ([gene|0B11FACEB5E96D166AC1EA0E32C68FCDAF8327E4|rhiG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AGGCTGGTTGACCGGCTCCA, downstream forward: _UP4_TTAAAATAAAAAGGAGTGTT
  • BKK06990 ([gene|0B11FACEB5E96D166AC1EA0E32C68FCDAF8327E4|rhiG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AGGCTGGTTGACCGGCTCCA, downstream forward: _UP4_TTAAAATAAAAAGGAGTGTT

    • References

  • 10092453,17449691,24391637,26235029