SubtiBank SubtiBank
yhcT [2017-11-28 08:00:16]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yhcT [2017-11-28 08:00:16]

similar to pseudouridylate synthase
locus
BSU09210
pI
9.64
mw
33.59 kDa
protein length
302 aa Sequence Blast
gene length
906 bp Sequence Blast
function
RNA modification
product
putative pseudouridylate synthase
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.3|rRNA modification and maturation/ based on similarity]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]

    • Gene

    Coordinates
    995,624 → 996,532

    The protein

    Catalyzed reaction/ biological activity

  • RNA uridine = RNA pseudouridine (according to Swiss-Prot)

    • Protein family

  • S4 RNA-binding domain (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|2AECDA9C4D0E704976B9E2168722EC80FE7A256D|YjbO], [protein|C8C2E2F1B739F3D9A2FA6B460998708AAB2DA495|YlyB]

    • Expression and Regulation

    Operons

    genes
    [gene|964F04481DFA789CB0F7387B066BE2E2CF88D8E5|S319]-[gene|064AE8CE6D52E35582F90654AA9548963573C05C|yhcT]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-A666 (yhcT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/666 NBRP B. subtilis, Japan]
  • BKE09210 (Δ[gene|064AE8CE6D52E35582F90654AA9548963573C05C|yhcT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTAAATGGCTCCTTTT, downstream forward: _UP4_TGAAGAAAAGCCGCAGGCAC
  • BKK09210 (Δ[gene|064AE8CE6D52E35582F90654AA9548963573C05C|yhcT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTAAATGGCTCCTTTT, downstream forward: _UP4_TGAAGAAAAGCCGCAGGCAC