ydfF

similar to transcriptional regulator ([SW|ArsR family])

locus: BSU_05390

pI: 10.02

mw: 25.47 kDa

protein length: 226 aa

gene length: 681 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 585,868 586,548

The protein

Protein family

• [SW|ArsR family]

[SW|Domains]

• [SW|HTH arsR-type domain] (aa 1-92) (according to UniProt)

Structure

• [PDB|2JSC] (from Mycobacterium tuberculosis, corresponds to aa 5 ... 87, 34% identity) [pubmed|17599915]

Expression and Regulation

Operons

• genes: [gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-C146 (ydfF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2144 NBRP B. subtilis, Japan]
• BKE05390 ([gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05390 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATTTTCCTCCTTACAT, downstream forward: _UP4_TAGGATTTTGAAGCGGAAAC
• BKK05390 ([gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05390 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATTTTCCTCCTTACAT, downstream forward: _UP4_TAGGATTTTGAAGCGGAAAC

References

• 23504016,17599915