SubtiBank SubtiBank
yfiI [2019-05-22 13:51:19]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yfiI [2019-05-22 13:51:19]

similar to oxidoreductase
locus
BSU08280
pI
5.10
mw
43.42 kDa
protein length
393 aa Sequence Blast
gene length
1182 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]
  • Gene

    Coordinates
    902,506 903,687

    The protein

    Protein family

  • gfo/idh/mocA family (according to Swiss-Prot)
  • Paralogous protein(s)

  • [protein|29DAF5343A42EAD8DB97925FE7D049410F7B7FCA|NtdC], [protein|484D17480DFAD3667E0EBC6D38854A7546A8DB46|YteT], [protein|7DFE74C751A67CCC84579D52005E1399B0A10166|IolW], [protein|920C5750CB95102B073C32874D512E8D636D2C7D|IolU], [protein|93C1DF93CAFC5AE726523A91A3BA7470017FF6DC|IolG], [protein|942BAE9FA023DFCA06B6D26A856A72F2979E23FA|YrbE], [protein|AA7DCEFB17FD6F9C4F65235E9A247A6EC2242B06|IolX]
  • Structure

  • [PDB|3DTY] (from Pseudomonas syringae, 56% identity)
  • Expression and Regulation

    Operons

    genes
    [gene|8B0701B5694ABA8142476CB896E590FE1981D7DB|yfiG]-[gene|8DA8F976B846665FA9E6BD0FF86FE1F58CCFD260|yfiH]-[gene|03BE6DA854612B3F6741E0E167AB310F0DE96285|yfiI]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C299 (yfiI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2297 NBRP B. subtilis, Japan]
  • BKE08280 ([gene|03BE6DA854612B3F6741E0E167AB310F0DE96285|yfiI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCCATTTAGCATCATGAAAA, downstream forward: _UP4_TAAATGAGGGAATGCGCCGC
  • BKK08280 ([gene|03BE6DA854612B3F6741E0E167AB310F0DE96285|yfiI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCCATTTAGCATCATGAAAA, downstream forward: _UP4_TAAATGAGGGAATGCGCCGC