Difference between revisions of "YybN"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 435 bp, 145 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 435 bp, 145 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yybO]]'', ''[[yyzL]]'', ''[[yybM]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yyzL]]'', ''[[yybM]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16095&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16095&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

Revision as of 09:17, 10 December 2012

  • Description: unknown

Gene name yybN
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yybN
MW, pI 16 kDa, 9.532
Gene length, protein length 435 bp, 145 aa
Immediate neighbours yyzL, yybM
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YybN context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YybN expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

Rok regulon

The gene

Basic information

  • Locus tag: BSU40580

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulatory mechanism:
  • Additional information:
    • the mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res.: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Mark Albano, Wiep Klaas Smits, Linh T Y Ho, Barbara Kraigher, Ines Mandic-Mulec, Oscar P Kuipers, David Dubnau
The Rok protein of Bacillus subtilis represses genes for cell surface and extracellular functions.
J. Bacteriol.: 2005, 187(6);2010-9
[PubMed:15743949] [WorldCat.org] [DOI] (P p)