Difference between revisions of "YvaK"

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* '''Description:''' general stress protein, similar to carboxylesterase <br/><br/>
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* '''Description:''' general stress protein, carboxylesterase <br/><br/>
  
 
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=== Additional information===
 
=== Additional information===
 
 
  
  
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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
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* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:'''
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* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvaK_3454221_3454967_-1 yvaK] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvaK_3454221_3454967_-1 yvaK] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
 
** ''[[yvaK]]'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]  
 
** ''[[yvaK]]'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]  
  
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=References=
 
=References=
 
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<pubmed>11544224, 17369301 23812333 </pubmed>
<pubmed>11544224, 17369301</pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 12:37, 3 July 2013

  • Description: general stress protein, carboxylesterase

Gene name yvaK
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yvaK
MW, pI 28 kDa, 4.992
Gene length, protein length 744 bp, 248 aa
Immediate neighbours rnr, secG
Sequences Protein DNA DNA_with_flanks
Genetic context
YvaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvaK expression.png















Categories containing this gene/protein

general stress proteins (controlled by SigB), poorly characterized/ putative enzymes, sporulation proteins

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU33620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: A carboxylic ester + H2O = an alcohol + a carboxylate (according to Swiss-Prot)
  • Protein family: lipase/esterase LIP3/bchO family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1TQH (Geobacillus stearothermophilus)
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Markus G Gall, Alberto Nobili, Ioannis V Pavlidis, Uwe T Bornscheuer
Improved thermostability of a Bacillus subtilis esterase by domain exchange.
Appl. Microbiol. Biotechnol.: 2014, 98(4);1719-26
[PubMed:23812333] [WorldCat.org] [DOI] (I p)

Ji-Hyun Shin, Chester W Price
The SsrA-SmpB ribosome rescue system is important for growth of Bacillus subtilis at low and high temperatures.
J. Bacteriol.: 2007, 189(10);3729-37
[PubMed:17369301] [WorldCat.org] [DOI] (P p)

A Petersohn, M Brigulla, S Haas, J D Hoheisel, U Völker, M Hecker
Global analysis of the general stress response of Bacillus subtilis.
J. Bacteriol.: 2001, 183(19);5617-31
[PubMed:11544224] [WorldCat.org] [DOI] (P p)