Difference between revisions of "YvaK"

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(Categories containing this gene/protein)
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU33620 yvaK]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33620 yvaK]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 4.992   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 4.992   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rnr]]'', ''[[secG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rnr]]'', ''[[secG]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15367&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33620 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvaK_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvaK_context.gif]]

Revision as of 14:51, 13 May 2013

  • Description: general stress protein, similar to carboxylesterase

Gene name yvaK
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yvaK
MW, pI 28 kDa, 4.992
Gene length, protein length 744 bp, 248 aa
Immediate neighbours rnr, secG
Sequences Protein DNA Advanced_DNA
Genetic context
YvaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvaK expression.png
























Categories containing this gene/protein

general stress proteins (controlled by SigB), poorly characterized/ putative enzymes, sporulation proteins

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU33620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: A carboxylic ester + H2O = an alcohol + a carboxylate (according to Swiss-Prot)
  • Protein family: lipase/esterase LIP3/bchO family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 1TQH (Geobacillus stearothermophilus)
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ji-Hyun Shin, Chester W Price
The SsrA-SmpB ribosome rescue system is important for growth of Bacillus subtilis at low and high temperatures.
J. Bacteriol.: 2007, 189(10);3729-37
[PubMed:17369301] [WorldCat.org] [DOI] (P p)

A Petersohn, M Brigulla, S Haas, J D Hoheisel, U Völker, M Hecker
Global analysis of the general stress response of Bacillus subtilis.
J. Bacteriol.: 2001, 183(19);5617-31
[PubMed:11544224] [WorldCat.org] [DOI] (P p)