Difference between revisions of "YqfD"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[phoH]]'', ''[[yqfC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[phoH]]'', ''[[yqfC]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU25350 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU25350 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU25350 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU25350 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU25350 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU25350 DNA_with_flanks]
 
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Revision as of 11:45, 14 May 2013

  • Description: SigE-dependent sporulation gene, similar to UDP-glucose 4-epimerase

Gene name yqfD
Synonyms
Essential no
Product unknown
Function sporulation
Gene expression levels in SubtiExpress: yqfD
MW, pI 45 kDa, 9.997
Gene length, protein length 1194 bp, 398 aa
Immediate neighbours phoH, yqfC
Sequences Protein DNA DNA_with_flanks
Genetic context
YqfD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YqfD expression.png


























Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigE regulon

The gene

Basic information

  • Locus tag: BSU25350

Phenotypes of a mutant

defect in sporulation PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot), Polar (Septum) PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Jean-Christophe Meile, Ling Juan Wu, S Dusko Ehrlich, Jeff Errington, Philippe Noirot
Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.
Proteomics: 2006, 6(7);2135-46
[PubMed:16479537] [WorldCat.org] [DOI] (P p)

Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol.: 2004, 2(10);e328
[PubMed:15383836] [WorldCat.org] [DOI] (I p)

Andrea Feucht, Louise Evans, Jeff Errington
Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis.
Microbiology (Reading, Engl.): 2003, 149(Pt 10);3023-34
[PubMed:14523133] [WorldCat.org] [DOI] (P p)

Patrick Eichenberger, Shane T Jensen, Erin M Conlon, Christiaan van Ooij, Jessica Silvaggi, José Eduardo González-Pastor, Masaya Fujita, Sigal Ben-Yehuda, Patrick Stragier, Jun S Liu, Richard Losick
The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis.
J. Mol. Biol.: 2003, 327(5);945-72
[PubMed:12662922] [WorldCat.org] [DOI] (P p)