Difference between revisions of "YqfD"

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* '''Description:''' [[SigE]]-dependent sporulation gene, similar to UDP-glucose 4-epimerase <br/><br/>
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* '''Description:''' [[SigE]]-dependent sporulation gene, similar to UDP-glucose 4-epimerase &lt;br/>&lt;br/>
 
  
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[phoH]]'', ''[[yqfC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[phoH]]'', ''[[yqfC]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&amp;#91;EMBLCDS:CAB14477&amp;#93;+-newId sequences] &lt;br/> (Barbe ''et al.'', 2009)'''
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14477&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
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|colspan="2" | '''Genetic context''' &lt;br/> [[Image:yqfD_context.gif]]
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|colspan="2" | '''Genetic context''' <br/> [[Image:yqfD_context.gif]]
  &lt;div align="right"> &lt;small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]&lt;/small>&lt;/div>
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  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
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__TOC__
 
__TOC__
  
&lt;br/>&lt;br/>&lt;br/>&lt;br/>
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<br/><br/><br/><br/>
  
 
=The gene=
 
=The gene=
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=References=
 
=References=
  
&lt;pubmed>14523133,16479537 12662922,15383836&lt;/pubmed>
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<pubmed>14523133,16479537 12662922,15383836</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 06:13, 24 November 2010

  • Description: SigE-dependent sporulation gene, similar to UDP-glucose 4-epimerase

Gene name yqfD
Synonyms
Essential no
Product unknown
Function sporulation
MW, pI 45 kDa, 9.997
Gene length, protein length 1194 bp, 398 aa
Immediate neighbours phoH, yqfC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YqfD context.gif
This image was kindly provided by SubtiList





The gene

Basic information

  • Locus tag: BSU25350

Phenotypes of a mutant

defect in sporulation PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot), Polar (Septum) PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Jean-Christophe Meile, Ling Juan Wu, S Dusko Ehrlich, Jeff Errington, Philippe Noirot
Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.
Proteomics: 2006, 6(7);2135-46
[PubMed:16479537] [WorldCat.org] [DOI] (P p)

Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol.: 2004, 2(10);e328
[PubMed:15383836] [WorldCat.org] [DOI] (I p)

Andrea Feucht, Louise Evans, Jeff Errington
Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis.
Microbiology (Reading, Engl.): 2003, 149(Pt 10);3023-34
[PubMed:14523133] [WorldCat.org] [DOI] (P p)

Patrick Eichenberger, Shane T Jensen, Erin M Conlon, Christiaan van Ooij, Jessica Silvaggi, José Eduardo González-Pastor, Masaya Fujita, Sigal Ben-Yehuda, Patrick Stragier, Jun S Liu, Richard Losick
The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis.
J. Mol. Biol.: 2003, 327(5);945-72
[PubMed:12662922] [WorldCat.org] [DOI] (P p)