Difference between revisions of "YpdA"

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* '''[[SubtInteract|Interactions]]:'''
 
* '''[[SubtInteract|Interactions]]:'''
  
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
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* '''[[Localization]]:'''
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** cell membrane (according to Swiss-Prot)
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypdA_2400984_2401958_-1 ypdA] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypdA_2400984_2401958_-1 ypdA] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 20:03, 18 June 2013

  • Description: similar to thioredoxin reductase

Gene name ypdA
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ypdA
MW, pI 36 kDa, 6.083
Gene length, protein length 972 bp, 324 aa
Immediate neighbours prsW, gudB
Sequences Protein DNA DNA_with_flanks
Genetic context
YpdA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YpdA expression.png















Categories containing this gene/protein

electron transport/ other, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU22950

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: Trx reductase family
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

YpdA, YqiW, YphP and YtxJ cooccur in those species predicted to synthesize bacillithiol.

References

Ahmed Gaballa, Gerald L Newton, Haike Antelmann, Derek Parsonage, Heather Upton, Mamta Rawat, Al Claiborne, Robert C Fahey, John D Helmann
Biosynthesis and functions of bacillithiol, a major low-molecular-weight thiol in Bacilli.
Proc. Natl. Acad. Sci. U.S.A.: 2010, 107(14);6482-6
[PubMed:20308541] [WorldCat.org] [DOI] (I p)