Difference between revisions of "YodF"

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(Biological materials)
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* '''Mutant:'''
* '''Mutant:'''
** available in [[Erhard Bremer]]'s lab {{PubMed|24142252}}
** available in [[Erhard Bremer]]'s lab {{PubMed|24142252}}
** GP1887 (kan) available in [[Jörg Stülke]]'s lab
* '''Expression vector:'''
* '''Expression vector:'''

Revision as of 14:05, 18 September 2014

  • Description: similar to amino acid permease

Gene name yodF
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yodF
Metabolic function and regulation of this protein in SubtiPathways:
MW, pI 53 kDa, 9.682
Gene length, protein length 1488 bp, 496 aa
Immediate neighbours yoyD, ctpA
Sequences Protein DNA DNA_with_flanks
Genetic context
YodF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YodF expression.png

Categories containing this gene/protein

transporters/ other, putative amino acid transporter, membrane proteins

This gene is a member of the following regulons

TnrA regulon

The gene

Basic information

  • Locus tag: BSU19580

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • in some database, the protein is annotated as being similar to proline permease, however, it is not involved in proline transport PubMed
  • Protein family: solute:sodium symporter family (SSS family)
  • Paralogous protein(s): YhjB

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation: repressed by casamino acids PubMed
    • repressed in the absence of good nitrogen sources (glutamine or ammonium) (TnrA) PubMed
  • Regulatory mechanism:
  • Additional information:
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 445 PubMed
    • number of protein molecules per cell (complex medium with amino acids, without glucose): 807 PubMed

Biological materials

  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks


Adrienne Zaprasis, Tamara Hoffmann, Lorena Stannek, Katrin Gunka, Fabian M Commichau, Erhard Bremer
The γ-aminobutyrate permease GabP serves as the third proline transporter of Bacillus subtilis.
J. Bacteriol.: 2014, 196(3);515-26
[PubMed:24142252] [WorldCat.org] [DOI] (I p)

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

Ken-ichi Yoshida, Hirotake Yamaguchi, Masaki Kinehara, Yo-hei Ohki, Yoshiko Nakaura, Yasutaro Fujita
Identification of additional TnrA-regulated genes of Bacillus subtilis associated with a TnrA box.
Mol. Microbiol.: 2003, 49(1);157-65
[PubMed:12823818] [WorldCat.org] [DOI] (P p)

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J. Bacteriol.: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)